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GrainGenes Marker Report: k03646

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Locus	k03646
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 127.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah15k11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/N SNP structure (UNICODE) = CACAAACGAAA/NGCGCGTCTTG Parent 1 SNP sequence = CACAAACGAAAGCGCGTCTTG Parent 2 SNP sequence = CACAAACGAANGCGCGTCTTG Recognized sequence for CAPs locus = GCGC SNP = C/T SNP structure (UNICODE) = GCCACGCATGYGCACAAGAAA Parent 1 SNP sequence = GCCACGCATGCGCACAAGAAA Parent 2 SNP sequence = GCCACGCATGTGCACAAGAAA
Probe for Locus	bah15k11
Locus	k03646
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GAGCTGCAGAGCCTTCCAT Right 5' - GTACTACGGCCTCAAGCGAG
Sequence	AV835674
PCR size	465