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GrainGenes Marker Report: k03648

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Locus	k03648
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 186.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah16c17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/T SNP structure (UNICODE) = TCGTGCTTATYACATCAACCT Parent 1 SNP sequence = TCGTGCTTATCACATCAACCT Parent 2 SNP sequence = TCGTGCTTATTACATCAACCT SNP = A/C SNP structure (UNICODE) = ACATCAACCTMGTATCGTGTG Parent 1 SNP sequence = ACATCAACCTAGTATCGTGTG Parent 2 SNP sequence = ACATCAACCTCGTATCGTGTG SNP structure (UNICODE) = ACGGGAGATGMTGGGATTCAC Parent 1 SNP sequence = ACGGGAGATGATGGGATTCAC Parent 2 SNP sequence = ACGGGAGATGCTGGGATTCAC
Probe for Locus	bah16c17
Locus	k03648
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Aspartic proteinase precursor pir JS0732 aspartic proteinase (EC 3.4.23.-) - rice
Type	PCR
PCR primers	Left 5' - TGCTAATTGCTTCCCAAGGT Right 5' - ATCCCCTTTGTTTTGCATGA
Sequence	AV943178
PCR size	417