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GrainGenes Marker Report: k03651

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Locus	k03651
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 108.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah16i19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/G SNP structure (UNICODE) = ATACATTATCKTGAGTGACTA Parent 1 SNP sequence = ATACATTATCTTGAGTGACTA Parent 2 SNP sequence = ATACATTATCGTGAGTGACTA SNP = G/A SNP structure (UNICODE) = GATTGTAGCARTTAGATACAT Parent 1 SNP sequence = GATTGTAGCAGTTAGATACAT Parent 2 SNP sequence = GATTGTAGCAATTAGATACAT SNP = A/T SNP structure (UNICODE) = ATGATGCACAWTTGCATCTCT Parent 1 SNP sequence = ATGATGCACAATTGCATCTCT Parent 2 SNP sequence = ATGATGCACATTTGCATCTCT SNP = G/C SNP structure (UNICODE) = GTCTTTCTCTSGATAGAATAA Parent 1 SNP sequence = GTCTTTCTCTGGATAGAATAA Parent 2 SNP sequence = GTCTTTCTCTCGATAGAATAA
Probe for Locus	bah16i19
Locus	k03651
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0085H11.4 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGGACGACATGGTTTTTGTT Right 5' - AAGAACGTACTGCGGAAGGA
Sequence	AV943254
PCR size	438