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GrainGenes Marker Report: k03666

Locus	k03666
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 110
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah17f24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = A/G SNP structure (UNICODE) = GATCTGTTACRTCTACAGCAT Parent 1 SNP sequence = GATCTGTTACATCTACAGCAT Parent 2 SNP sequence = GATCTGTTACGTCTACAGCAT SNP = C/T SNP structure (UNICODE) = TAACAATCCTYATATTGTGGA Parent 1 SNP sequence = TAACAATCCTCATATTGTGGA Parent 2 SNP sequence = TAACAATCCTTATATTGTGGA SNP = G/A SNP structure (UNICODE) = AAATACAACARCATATGAAAA Parent 1 SNP sequence = AAATACAACAGCATATGAAAA Parent 2 SNP sequence = AAATACAACAACATATGAAAA SNP = C/A SNP structure (UNICODE) = AAGCCACGCAMATAGATCTGT Parent 1 SNP sequence = AAGCCACGCACATAGATCTGT Parent 2 SNP sequence = AAGCCACGCAAATAGATCTGT SNP = G/T SNP structure (UNICODE) = CTTACAAAATKTAGACAAGCA Parent 1 SNP sequence = CTTACAAAATGTAGACAAGCA Parent 2 SNP sequence = CTTACAAAATTTAGACAAGCA
Probe for Locus	bah17f24
Locus	k03666
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative zinc finger protein [Oryza sativa (japonica cultivar-group)] dbj BAB85374.1 putative zinc finger protein [Oryza sativa (japonica c
Type	PCR
PCR primers	Left 5' - CCTCGCTGACCCTTCAAGTA Right 5' - CACAAACGACGTCTGCAGTT
Sequence	AV943426
PCR size	396