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GrainGenes Marker Report: k03671

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Locus	k03671
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 33.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah19f01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MvaI SNP = G/A SNP structure (UNICODE) = CGAAGTTCCARGCGTCATTGA Parent 1 SNP sequence = CGAAGTTCCAGGCGTCATTGA Parent 2 SNP sequence = CGAAGTTCCAAGCGTCATTGA Recognized sequence for CAPs locus = CCWGG
Probe for Locus	bah19f01
Locus	k03671
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative tRNA synthase [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CATCAGGGGAAGGTGAAAAA Right 5' - CAAGGAGGTTGGTTTCCTGA
Sequence	AV943902
PCR size	468