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GrainGenes Marker Report: k03674

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Locus	k03674
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 117.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah16h01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MvaI SNP = A/G SNP structure (UNICODE) = CAGCACCGCCRGGAGTTTGCT Parent 1 SNP sequence = CAGCACCGCCAGGAGTTTGCT Parent 2 SNP sequence = CAGCACCGCCGGGAGTTTGCT Recognized sequence for CAPs locus = CCWGG
Probe for Locus	bah16h01
Locus	k03674
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OJ1116_H09.22 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TAGCATGGGGAAAACCTGAC Right 5' - ACTTGTGGGCAAAAGCAATC
Sequence	AV835692
PCR size	459