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GrainGenes Marker Report: k03706

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Locus	k03706
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 75.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah19d23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = CCACATCTGGMAGGTGTTCAG Parent 1 SNP sequence = CCACATCTGGAAGGTGTTCAG Parent 2 SNP sequence = CCACATCTGGCAGGTGTTCAG SNP = T/C SNP structure (UNICODE) = GCCTTCAAGCYTTCATACGCA Parent 1 SNP sequence = GCCTTCAAGCTTTCATACGCA Parent 2 SNP sequence = GCCTTCAAGCCTTCATACGCA SNP = C/T SNP structure (UNICODE) = CTGCTGTAGCYTAGCTGAGAC Parent 1 SNP sequence = CTGCTGTAGCCTAGCTGAGAC Parent 2 SNP sequence = CTGCTGTAGCTTAGCTGAGAC
Probe for Locus	bah19d23
Locus	k03706
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0672D08.28 [Oryza sativa (japonica cultivar-group)] dbj BAB62639.1 contains ESTs AU032851(S13343),AU089731(S13343)~unknown protein
Type	PCR
PCR primers	Left 5' - GCATGGACCTTGAAGCAACT Right 5' - AAATCCTAGCCCAGTGCAGA
Sequence	AV943883
PCR size	361