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GrainGenes Marker Report: k03727

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Locus	k03727
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 302.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah17p16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/T SNP structure (UNICODE) = CTGGATTTCCKGCTGCCCGAT Parent 1 SNP sequence = CTGGATTTCCGGCTGCCCGAT Parent 2 SNP sequence = CTGGATTTCCTGCTGCCCGAT Recognized sequence for CAPs locus = CCGG
Probe for Locus	bah17p16
Locus	k03727
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0108J11.20 [Oryza sativa (japonica cultivar-group)] emb CAE04620.3 OSJNBa0028I23.2 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTTGACTGCAATGCTGGTA Right 5' - GGTGAAGGTGGCATTTGTCT
Sequence	AV835730
PCR size	424