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GrainGenes Marker Report: k03777

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Locus	k03777
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 231.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah22m17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/T SNP structure (UNICODE) = TTGTTCATTAYACATACTAAC Parent 1 SNP sequence = TTGTTCATTACACATACTAAC Parent 2 SNP sequence = TTGTTCATTATACATACTAAC SNP = A/G SNP structure (UNICODE) = TCAAGAACCCRACCTGGAGAA Parent 1 SNP sequence = TCAAGAACCCAACCTGGAGAA Parent 2 SNP sequence = TCAAGAACCCGACCTGGAGAA SNP = G/A SNP structure (UNICODE) = ATCATGCTGCRACGGTCAGCT Parent 1 SNP sequence = ATCATGCTGCGACGGTCAGCT Parent 2 SNP sequence = ATCATGCTGCAACGGTCAGCT SNP structure (UNICODE) = TGTTTCCGGTRTCTCTGCTGC Parent 1 SNP sequence = TGTTTCCGGTATCTCTGCTGC Parent 2 SNP sequence = TGTTTCCGGTGTCTCTGCTGC
Probe for Locus	bah22m17
Locus	k03777
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DNA-binding protein, putative [Arabidopsis thaliana] gb AAK76494.1 putative helicase [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCTGTCTCCAAACTCCATCC Right 5' - CATGGAGACCAGTGCAAAGA
Sequence	AV835854
PCR size	364