Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03833

[Submit comment/correction]

Locus	k03833
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 286.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah21h09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/T SNP structure (UNICODE) = TTGTCTGGTGKCTAGGTAGAT Parent 1 SNP sequence = TTGTCTGGTGGCTAGGTAGAT Parent 2 SNP sequence = TTGTCTGGTGTCTAGGTAGAT SNP = A/T SNP structure (UNICODE) = ATAAAACTGAWTTGGAAAAGT Parent 1 SNP sequence = ATAAAACTGAATTGGAAAAGT Parent 2 SNP sequence = ATAAAACTGATTTGGAAAAGT SNP = A/G SNP structure (UNICODE) = CAGTTCATCTRATTTTGGTTT Parent 1 SNP sequence = CAGTTCATCTAATTTTGGTTT Parent 2 SNP sequence = CAGTTCATCTGATTTTGGTTT
Probe for Locus	bah21h09
Locus	k03833
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0017I01.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGACAGCTTAGCTTGCTCCA Right 5' - GATGCAGTCAGCCATGAAGA
Sequence	AV835821
PCR size	371