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GrainGenes Marker Report: k03899

Locus	k03899
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 257.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah28p12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = C/A SNP structure (UNICODE) = AAGGCATGTAMGTATGTCATC Parent 1 SNP sequence = AAGGCATGTACGTATGTCATC Parent 2 SNP sequence = AAGGCATGTAAGTATGTCATC Recognized sequence for CAPs locus = GTAC
Probe for Locus	bah28p12
Locus	k03899
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0015K02.7 [Oryza sativa (japonica cultivar-group)] emb CAE54579.1 OSJNBa0011F23.20 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCCAATCCAAACACCAACAA Right 5' - GGGATGTGATTGGGATGAAC
Sequence	AV836006
PCR size	356