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GrainGenes Marker Report: k03954

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Locus	k03954
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 265
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah31l17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = G/A SNP structure (UNICODE) = AAAATAATAARAGGAACCCAC Parent 1 SNP sequence = AAAATAATAAGAGGAACCCAC Parent 2 SNP sequence = AAAATAATAAAAGGAACCCAC SNP = A/G SNP structure (UNICODE) = TTGATCAAATRAGGCCAAAAT Parent 1 SNP sequence = TTGATCAAATAAGGCCAAAAT Parent 2 SNP sequence = TTGATCAAATGAGGCCAAAAT SNP structure (UNICODE) = AGTCAAACTGRTTGCACATTT Parent 1 SNP sequence = AGTCAAACTGATTGCACATTT Parent 2 SNP sequence = AGTCAAACTGGTTGCACATTT SNP = G/T SNP structure (UNICODE) = ATCAAAAACAKTATAGAACTT Parent 1 SNP sequence = ATCAAAAACAGTATAGAACTT Parent 2 SNP sequence = ATCAAAAACATTATAGAACTT SNP structure (UNICODE) = AGGATGCCACRGCCTTTTGTA Parent 1 SNP sequence = AGGATGCCACAGCCTTTTGTA Parent 2 SNP sequence = AGGATGCCACGGCCTTTTGTA
Probe for Locus	bah31l17
Locus	k03954
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = oxygen-evolving complex-related [Arabidopsis thaliana] gb AAL62404.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCACATCCTATGCGCTGGTA Right 5' - ATGTACGACGGCAACGACTT
Sequence	AV946376
PCR size	374