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GrainGenes Marker Report: k03966

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Locus	k03966
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 186.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah31m22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = TGGATCATCARTTTCATCACA Parent 1 SNP sequence = TGGATCATCAATTTCATCACA Parent 2 SNP sequence = TGGATCATCAGTTTCATCACA SNP = T/C SNP structure (UNICODE) = CGGGGTCTTGYTCGGGGATGT Parent 1 SNP sequence = CGGGGTCTTGTTCGGGGATGT Parent 2 SNP sequence = CGGGGTCTTGCTCGGGGATGT SNP = T/A SNP structure (UNICODE) = GTAGAGCTCTWGCTGGAAGGA Parent 1 SNP sequence = GTAGAGCTCTTGCTGGAAGGA Parent 2 SNP sequence = GTAGAGCTCTAGCTGGAAGGA SNP structure (UNICODE) = GTCTACATGCRAAGAACCCTG Parent 1 SNP sequence = GTCTACATGCAAAGAACCCTG Parent 2 SNP sequence = GTCTACATGCGAAGAACCCTG
Probe for Locus	bah31m22
Locus	k03966
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phosphatidylinositol-phosphatidylcholine transfer protein SEC14 homolog Ssh1 - soybean
Type	PCR
PCR primers	Left 5' - TCCTAGCCTGTATTTCGCGT Right 5' - CAAGGTGCTTAGCAAGGAGG
Sequence	AV836061
PCR size	351