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GrainGenes Marker Report: k04017

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Locus	k04017
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 253.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah33p11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = C/T SNP structure (UNICODE) = AGGTAACCAGYTTTAGCCATT Parent 1 SNP sequence = AGGTAACCAGCTTTAGCCATT Parent 2 SNP sequence = AGGTAACCAGTTTTAGCCATT Recognized sequence for CAPs locus = AGCT
Probe for Locus	bah33p11
Locus	k04017
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = csAtPR5 [Aegilops tauschii]
Type	PCR
PCR primers	Left 5' - CCCAAAGGCCTTACGAATTT Right 5' - AAATCATCGAAGAATTGCCG
Sequence	AV836087
PCR size	470