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GrainGenes Marker Report: k04050

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Locus	k04050
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 126
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah37f01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 9 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = C/A SNP structure (UNICODE) = AAGCTGGCGCMTGTACTATGT Parent 1 SNP sequence = AAGCTGGCGCCTGTACTATGT Parent 2 SNP sequence = AAGCTGGCGCATGTACTATGT SNP = T/C SNP structure (UNICODE) = GACGTGGCCGYATATTCTTCT Parent 1 SNP sequence = GACGTGGCCGTATATTCTTCT Parent 2 SNP sequence = GACGTGGCCGCATATTCTTCT
Probe for Locus	bah37f01
Locus	k04050
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative phospholipase D-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCGACGAAATTCATCAAGG Right 5' - AACAGCATGGAGCGAAAAGT
Sequence	AV836143
PCR size	367