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GrainGenes Marker Report: k04082

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Locus	k04082
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 136.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah36f01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = CAGTTCCTCTRGAACAGAGCT Parent 1 SNP sequence = CAGTTCCTCTAGAACAGAGCT Parent 2 SNP sequence = CAGTTCCTCTGGAACAGAGCT Recognized sequence for CAPs locus = CGCG SNP = T/G SNP structure (UNICODE) = CGGGTGTAGTKGCACCAGCCG Parent 1 SNP sequence = CGGGTGTAGTTGCACCAGCCG Parent 2 SNP sequence = CGGGTGTAGTGGCACCAGCCG
Probe for Locus	bah36f01
Locus	k04082
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = NOD26-like membrane integral protein ZmNIP2-3 [Zea mays]
Type	PCR
PCR primers	Left 5' - CCAGCTGTAGCTCCGAAAAC Right 5' - CCACCACCAAGGAAGACATC
Sequence	AV946827
PCR size	351