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GrainGenes Marker Report: k04143

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Locus	k04143
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 270.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah41l03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ApaLI SNP = G/A SNP structure (UNICODE) = TGCCGTGGCCRTGCACGATGA Parent 1 SNP sequence = TGCCGTGGCCGTGCACGATGA Parent 2 SNP sequence = TGCCGTGGCCATGCACGATGA Recognized sequence for CAPs locus = GTGCAC
Probe for Locus	bah41l03
Locus	k04143
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)] dbj BAD03752.1 unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTGTTTTAGCTCTGCCAGCC Right 5' - AGAAGAGGAAAACGGAAGGG
Sequence	AV930524
PCR size	386