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GrainGenes Marker Report: k04169

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Locus	k04169
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 6.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah42i06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DraIII SNP = C/G SNP structure (UNICODE) = CTTGCTTGCTSACATGGTGAG Parent 1 SNP sequence = CTTGCTTGCTCACATGGTGAG Parent 2 SNP sequence = CTTGCTTGCTGACATGGTGAG Recognized sequence for CAPs locus = CACNNNGTG
Probe for Locus	bah42i06
Locus	k04169
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein~similar to Arabidopsis thaliana chromosome 1, At1g62730 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACGCCGACAGAGAAAGAAAA Right 5' - GTGAATCGTCTCGCCAGAAT
Sequence	BJ482996
PCR size	422