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GrainGenes Marker Report: k04189

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Locus	k04189
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 37.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah41b09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 24 ] SNP = G/C SNP structure (UNICODE) = CTCCCAGCCTSTGCCCCCGGC Parent 1 SNP sequence = CTCCCAGCCTGTGCCCCCGGC Parent 2 SNP sequence = CTCCCAGCCTCTGCCCCCGGC SNP structure (UNICODE) = CCCTTCTTGGSCTTCTTGCTA Parent 1 SNP sequence = CCCTTCTTGGGCTTCTTGCTA Parent 2 SNP sequence = CCCTTCTTGGCCTTCTTGCTA SNP = G/A SNP structure (UNICODE) = TGCCGAACCCRAGCTCGTCGG Parent 1 SNP sequence = TGCCGAACCCGAGCTCGTCGG Parent 2 SNP sequence = TGCCGAACCCAAGCTCGTCGG SNP structure (UNICODE) = CCCCCCTCGGSCTTGCCCTTC Parent 1 SNP sequence = CCCCCCTCGGGCTTGCCCTTC Parent 2 SNP sequence = CCCCCCTCGGCCTTGCCCTTC SNP = A/T SNP structure (UNICODE) = GTCGATCTCGWTGCTCTCCTT Parent 1 SNP sequence = GTCGATCTCGATGCTCTCCTT Parent 2 SNP sequence = GTCGATCTCGTTGCTCTCCTT SNP structure (UNICODE) = TGTCGGACTTRGTGGCCTCGA Parent 1 SNP sequence = TGTCGGACTTGGTGGCCTCGA Parent 2 SNP sequence = TGTCGGACTTAGTGGCCTCGA SNP structure (UNICODE) = CCCCCGGCCTSCTTCTTGCTC Parent 1 SNP sequence = CCCCCGGCCTGCTTCTTGCTC Parent 2 SNP sequence = CCCCCGGCCTCCTTCTTGCTC
Probe for Locus	bah41b09
Locus	k04189
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative growth factor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCCTTCCAAAGAGCTTCTCC Right 5' - TGTGCTGTTGGATGATGTCC
Sequence	BJ482714
PCR size	400