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GrainGenes Marker Report: k04243

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Locus	k04243
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 198.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah47l21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/T SNP structure (UNICODE) = TTGCCTTGAAKGCAAACCTTG Parent 1 SNP sequence = TTGCCTTGAAGGCAAACCTTG Parent 2 SNP sequence = TTGCCTTGAATGCAAACCTTG SNP = G/A SNP structure (UNICODE) = CATTCTCTTCRTGCGAAACTA Parent 1 SNP sequence = CATTCTCTTCGTGCGAAACTA Parent 2 SNP sequence = CATTCTCTTCATGCGAAACTA SNP structure (UNICODE) = TCCACCCGTCKGTCCTTTGCT Parent 1 SNP sequence = TCCACCCGTCGGTCCTTTGCT Parent 2 SNP sequence = TCCACCCGTCTGTCCTTTGCT SNP = A/G SNP structure (UNICODE) = ACACCTCGCCRTCGTCGCCGC Parent 1 SNP sequence = ACACCTCGCCATCGTCGCCGC Parent 2 SNP sequence = ACACCTCGCCGTCGTCGCCGC
Probe for Locus	bah47l21
Locus	k04243
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = At2g02230 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCTTGGCGAAATAGGAATGG Right 5' - CCAGACGATGAATCGGACTT
Sequence	BJ483874
PCR size	414