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GrainGenes Marker Report: k04277

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Locus	k04277
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 27.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah47d23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = TGTCACCGGCRTCAGCATAGT Parent 1 SNP sequence = TGTCACCGGCATCAGCATAGT Parent 2 SNP sequence = TGTCACCGGCGTCAGCATAGT SNP = G/A SNP structure (UNICODE) = GGTTTGGCGCRATGTCACCGG Parent 1 SNP sequence = GGTTTGGCGCGATGTCACCGG Parent 2 SNP sequence = GGTTTGGCGCAATGTCACCGG SNP = C/T SNP structure (UNICODE) = GGGCCCTGTGYGCTTGGTTTG Parent 1 SNP sequence = GGGCCCTGTGCGCTTGGTTTG Parent 2 SNP sequence = GGGCCCTGTGTGCTTGGTTTG SNP structure (UNICODE) = CTGGTTCTTCRCACCACTGGT Parent 1 SNP sequence = CTGGTTCTTCGCACCACTGGT Parent 2 SNP sequence = CTGGTTCTTCACACCACTGGT
Probe for Locus	bah47d23
Locus	k04277
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = WREBP-2 [Nicotiana tabacum]
Type	PCR
PCR primers	Left 5' - ATCCGTCTTGCTTCTCCATC Right 5' - CCAGCAGTCAAAAGAGGACC
Sequence	BJ483773
PCR size	362