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GrainGenes Marker Report: k04280

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Locus	k04280
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 116.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah47n12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/G SNP structure (UNICODE) = CGATGGGTACSGCAGCTTGAA Parent 1 SNP sequence = CGATGGGTACCGCAGCTTGAA Parent 2 SNP sequence = CGATGGGTACGGCAGCTTGAA SNP = C/T SNP structure (UNICODE) = CTGCTTCTTCYGCTGGGGGCC Parent 1 SNP sequence = CTGCTTCTTCCGCTGGGGGCC Parent 2 SNP sequence = CTGCTTCTTCTGCTGGGGGCC SNP = A/G SNP structure (UNICODE) = CTACACGTACRCAAGCTGCAG Parent 1 SNP sequence = CTACACGTACACAAGCTGCAG Parent 2 SNP sequence = CTACACGTACGCAAGCTGCAG
Probe for Locus	bah47n12
Locus	k04280
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)] gb AAK43502.1 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGTGTTTTACATTTCGGCA Right 5' - GAAGCCATCATTGGAGGAAA
Sequence	BU989216
PCR size	419