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GrainGenes Marker Report: k04408

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Locus	k04408
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 259.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah49p10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/T SNP structure (UNICODE) = TTCACCACGGWGCCGTCGACC Parent 1 SNP sequence = TTCACCACGGAGCCGTCGACC Parent 2 SNP sequence = TTCACCACGGTGCCGTCGACC SNP = T/G SNP structure (UNICODE) = ACTGGAGCTGKAGCTCGACCT Parent 1 SNP sequence = ACTGGAGCTGTAGCTCGACCT Parent 2 SNP sequence = ACTGGAGCTGGAGCTCGACCT SNP = C/G SNP structure (UNICODE) = GCCTGACGCGSCCTTGGAGCC Parent 1 SNP sequence = GCCTGACGCGCCCTTGGAGCC Parent 2 SNP sequence = GCCTGACGCGGCCTTGGAGCC SNP = A/G SNP structure (UNICODE) = TCCACCAGCGRCCCGATGTCC Parent 1 SNP sequence = TCCACCAGCGACCCGATGTCC Parent 2 SNP sequence = TCCACCAGCGGCCCGATGTCC
Probe for Locus	bah49p10
Locus	k04408
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = C2 domain-containing protein [Arabidopsis thaliana] dbj BAB08320.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCTGCCAGATTTTTCCAAGC Right 5' - CTACAAGAAGACCGCCGAAG
Sequence	BJ552240
PCR size	351