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GrainGenes Marker Report: k04420

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Locus	k04420
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 144.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah53m11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/T SNP structure (UNICODE) = GCGCGTCGCAKACGAACTCCC Parent 1 SNP sequence = GCGCGTCGCAGACGAACTCCC Parent 2 SNP sequence = GCGCGTCGCATACGAACTCCC SNP structure (UNICODE) = CGAAGAAGTTKGTCTTGCCCT Parent 1 SNP sequence = CGAAGAAGTTGGTCTTGCCCT Parent 2 SNP sequence = CGAAGAAGTTTGTCTTGCCCT SNP = C/G SNP structure (UNICODE) = ATCACTCCGTSTAACTGTCAC Parent 1 SNP sequence = ATCACTCCGTCTAACTGTCAC Parent 2 SNP sequence = ATCACTCCGTGTAACTGTCAC
Probe for Locus	bah53m11
Locus	k04420
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ribonucleoside-diphosphate reductase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCCTACAAATCCGCAAAGAA Right 5' - GTATCTAGGCAGCGTTTCGC
Sequence	BJ485086
PCR size	400