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GrainGenes Marker Report: k04427

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Locus	k04427
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 96.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah56g09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/T SNP structure (UNICODE) = ATAGGAGAGTYCGGCCTGGAG Parent 1 SNP sequence = ATAGGAGAGTCCGGCCTGGAG Parent 2 SNP sequence = ATAGGAGAGTTCGGCCTGGAG Recognized sequence for CAPs locus = GANTC
Probe for Locus	bah56g09
Locus	k04427
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein-like protein [Sorghum bicolor]
Type	PCR
PCR primers	Left 5' - AGGAAAGGCGAATCAAAGGT Right 5' - CAGCTGATCGACCAACAATG
Sequence	BJ484841
PCR size	436