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GrainGenes Marker Report: k04476

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Locus	k04476
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 146.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah56l03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/C SNP structure (UNICODE) = CTGCTCCTCGMACTCATTGAC Parent 1 SNP sequence = CTGCTCCTCGAACTCATTGAC Parent 2 SNP sequence = CTGCTCCTCGCACTCATTGAC Recognized sequence for CAPs locus = TCGA
Probe for Locus	bah56l03
Locus	k04476
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ABC transporter family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATTTATTGGAGGCGTCAAGC Right 5' - GTCGCCAAAACCATCAAATC
Sequence	BJ484910
PCR size	440