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GrainGenes Marker Report: k04484

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Locus	k04484
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 24.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah55p06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ClaI SNP = A/G SNP structure (UNICODE) = ACGGTCTCTCRTCGATGCGCT Parent 1 SNP sequence = ACGGTCTCTCATCGATGCGCT Parent 2 SNP sequence = ACGGTCTCTCGTCGATGCGCT Recognized sequence for CAPs locus = ATCGAT
Probe for Locus	bah55p06
Locus	k04484
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = similar to KIAA0845 protein [Homo sapiens]
Type	PCR
PCR primers	Left 5' - GTGAAGCGACAGGGGTAAGA Right 5' - GAAGTCCAAGAAGAGCGTGG
Sequence	BJ485451
PCR size	395