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GrainGenes Marker Report: k04494

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Locus	k04494
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 231.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah55b18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TspRI SNP = T/G SNP structure (UNICODE) = RT-/T-/TCYGCAGKGG-/CACGCATY Parent 1 SNP sequence = AT--CCGCAGTGG-ACGCATT Parent 2 SNP sequence = GTTTCTGCAGGGGCACGCATC Recognized sequence for CAPs locus = CASTGNN
Probe for Locus	bah55b18
Locus	k04494
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative G10 protein [Oryza sativa (japonica cultivar-group)] dbj BAB63707.1 putative G10 protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGGGTCACAGATCACAGCGT Right 5' - CTGGCATCATGGAAGAGGAG
Sequence	BJ485291
PCR size	372