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GrainGenes Marker Report: k04509

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Locus	k04509
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 48.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah56c06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XhoI SNP = G/A SNP structure (UNICODE) = TCCTAGCCTCRAGGAGTGAAT Parent 1 SNP sequence = TCCTAGCCTCGAGGAGTGAAT Parent 2 SNP sequence = TCCTAGCCTCAAGGAGTGAAT Recognized sequence for CAPs locus = CTCGAG
Probe for Locus	bah56c06
Locus	k04509
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GAAATTTTACGTCCCTGGCA Right 5' - CAAAAAGGTTGCCAACTTCC
Sequence	BJ484796
PCR size	423