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GrainGenes Marker Report: k04549

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Locus	k04549
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 93.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah56n18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = TGATGTAGTCRACGATCTCGT Parent 1 SNP sequence = TGATGTAGTCAACGATCTCGT Parent 2 SNP sequence = TGATGTAGTCGACGATCTCGT Recognized sequence for CAPs locus = TCGA
Probe for Locus	bah56n18
Locus	k04549
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = disulfide isomerase
Type	PCR
PCR primers	Left 5' - AAATGAACCAGACATCACTCCA Right 5' - AGAACGTCAACTCCGTCGTC
Sequence	AV919288
PCR size	382