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GrainGenes Marker Report: k04576

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Locus	k04576
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 149.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah57o01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = A/G SNP structure (UNICODE) = TCTCGCCGGCRTCCTCCTCCA Parent 1 SNP sequence = TCTCGCCGGCATCCTCCTCCA Parent 2 SNP sequence = TCTCGCCGGCGTCCTCCTCCA Recognized sequence for CAPs locus = NNNNNNNNNNNNNCATCC
Probe for Locus	bah57o01
Locus	k04576
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = heat shock protein 80 [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - CCATAGACCAGCATCCCCTA Right 5' - CATGTCGAGCAAGAAGACGA
Sequence	BJ483723
PCR size	422