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GrainGenes Marker Report: k04587

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Locus	k04587
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 73
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah57m03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = C/T SNP structure (UNICODE) = TGGAACAAGTYCAGTAGAAAT Parent 1 SNP sequence = TGGAACAAGTCCAGTAGAAAT Parent 2 SNP sequence = TGGAACAAGTTCAGTAGAAAT SNP = A/T SNP structure (UNICODE) = GATGAAATAGWGGCGTCGTTA Parent 1 SNP sequence = GATGAAATAGAGGCGTCGTTA Parent 2 SNP sequence = GATGAAATAGTGGCGTCGTTA SNP = T/C SNP structure (UNICODE) = ACTTGCGCGAYGCGATCGCAT Parent 1 SNP sequence = ACTTGCGCGATGCGATCGCAT Parent 2 SNP sequence = ACTTGCGCGACGCGATCGCAT SNP structure (UNICODE) = CGGATTTCTAYCAGACAAGAA Parent 1 SNP sequence = CGGATTTCTATCAGACAAGAA Parent 2 SNP sequence = CGGATTTCTACCAGACAAGAA SNP = T/A SNP structure (UNICODE) = ATTTTTAGAAWTAGGTGCAGA Parent 1 SNP sequence = ATTTTTAGAATTAGGTGCAGA Parent 2 SNP sequence = ATTTTTAGAAATAGGTGCAGA SNP = A/G SNP structure (UNICODE) = TAAGATGAGCRTGCCATTTTT Parent 1 SNP sequence = TAAGATGAGCATGCCATTTTT Parent 2 SNP sequence = TAAGATGAGCGTGCCATTTTT
Probe for Locus	bah57m03
Locus	k04587
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative C-8,7 sterol isomerase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCAGCAAAGAACAAACCCA Right 5' - CACTCACCCAAGCAGTTGAA
PCR size	360