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GrainGenes Marker Report: k04596

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Locus	k04596
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 120.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah60d03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = GGGCAACAAGRTCGCCTGCAT Parent 1 SNP sequence = GGGCAACAAGATCGCCTGCAT Parent 2 SNP sequence = GGGCAACAAGGTCGCCTGCAT SNP = T/C SNP structure (UNICODE) = ACAAATAATTYTGACAGTTCA Parent 1 SNP sequence = ACAAATAATTTTGACAGTTCA Parent 2 SNP sequence = ACAAATAATTCTGACAGTTCA SNP = C/T SNP structure (UNICODE) = TTATGGGCTCYGCGGCTTCTG Parent 1 SNP sequence = TTATGGGCTCCGCGGCTTCTG Parent 2 SNP sequence = TTATGGGCTCTGCGGCTTCTG
Probe for Locus	bah60d03
Locus	k04596
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = probable DNA-binding protein GBP16 - rice gb AAB80919.1 DNA-binding protein GBP16 [Oryza sativa]
Type	PCR
PCR primers	Left 5' - TTTACACACGCCACCAACAT Right 5' - CAAGGGTGGGTATAGCAGGA
Sequence	BJ486082
PCR size	354