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GrainGenes Marker Report: k04612

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Locus	k04612
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 96.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah60m17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 25 ] SNP = A/G SNP structure (UNICODE) = AAATCTGTTCRGTTGTGTTGC Parent 1 SNP sequence = AAATCTGTTCAGTTGTGTTGC Parent 2 SNP sequence = AAATCTGTTCGGTTGTGTTGC SNP = T/G SNP structure (UNICODE) = GAGAATGTTAKAACTAGGAGC Parent 1 SNP sequence = GAGAATGTTATAACTAGGAGC Parent 2 SNP sequence = GAGAATGTTAGAACTAGGAGC SNP = C/A SNP structure (UNICODE) = TTGAGCTGCAMGGAAGGTCTG Parent 1 SNP sequence = TTGAGCTGCACGGAAGGTCTG Parent 2 SNP sequence = TTGAGCTGCAAGGAAGGTCTG SNP structure (UNICODE) = TTGGATCTTCRCCGCTGGCAT Parent 1 SNP sequence = TTGGATCTTCACCGCTGGCAT Parent 2 SNP sequence = TTGGATCTTCGCCGCTGGCAT SNP = C/G SNP structure (UNICODE) = GTTGCCGTCASAATCATCGAT Parent 1 SNP sequence = GTTGCCGTCACAATCATCGAT Parent 2 SNP sequence = GTTGCCGTCAGAATCATCGAT SNP structure (UNICODE) = GAGGCACCTASTAAAATGGTA Parent 1 SNP sequence = GAGGCACCTACTAAAATGGTA Parent 2 SNP sequence = GAGGCACCTAGTAAAATGGTA SNP structure (UNICODE) = AAAACCTGCASCAGTTTGGAT Parent 1 SNP sequence = AAAACCTGCACCAGTTTGGAT Parent 2 SNP sequence = AAAACCTGCAGCAGTTTGGAT
Probe for Locus	bah60m17
Locus	k04612
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative triacylglycerol lipase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACAAAACTCCGGATTGCAG Right 5' - AAGAATGGAAAGCAACCAGC
Sequence	BJ486200
PCR size	416