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GrainGenes Marker Report: k04616

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Locus	k04616
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 65.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah61p18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] Restriction enzyme used for CAPS analysis = AciI SNP = G/A SNP structure (UNICODE) = TCAGCTCGGCRGAAGTCAGGT Parent 1 SNP sequence = TCAGCTCGGCGGAAGTCAGGT Parent 2 SNP sequence = TCAGCTCGGCAGAAGTCAGGT Recognized sequence for CAPs locus = GCGG SNP = C/T SNP structure (UNICODE) = TTGTTACCACYGCTGTCTCCG Parent 1 SNP sequence = TTGTTACCACCGCTGTCTCCG Parent 2 SNP sequence = TTGTTACCACTGCTGTCTCCG Recognized sequence for CAPs locus = CCGC
Probe for Locus	bah61p18
Locus	k04616
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GCAGGTTTCTGGAATAAGCG Right 5' - AAGAAGAAGCGCATGAGGAG
PCR size	426