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GrainGenes Marker Report: k04629

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Locus	k04629
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 72.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah62i11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = T/C SNP structure (UNICODE) = CTGCGGAGGCYGAACGGCTTG Parent 1 SNP sequence = CTGCGGAGGCTGAACGGCTTG Parent 2 SNP sequence = CTGCGGAGGCCGAACGGCTTG Recognized sequence for CAPs locus = GGCC
Probe for Locus	bah62i11
Locus	k04629
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0096F01.8 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATGCTCCCAGCGATCTATTG Right 5' - TGGCTTTTTGGATCACGAGT
Sequence	BJ486709
PCR size	482