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GrainGenes Marker Report: k04643

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Locus	k04643
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 65.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah63d12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Bsp1286I SNP = C/G SNP structure (UNICODE) = GCGAGGGGCASACGCCGCGGC Parent 1 SNP sequence = GCGAGGGGCACACGCCGCGGC Parent 2 SNP sequence = GCGAGGGGCAGACGCCGCGGC Recognized sequence for CAPs locus = GDGCHC
Probe for Locus	bah63d12
Locus	k04643
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAL77676.1 At2g36630/F1O11.26 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CACTACACAAACCGCCACAT Right 5' - CAAGGCCTTTGATAGGTTGG
Sequence	BJ486839
PCR size	433