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GrainGenes Marker Report: k04644

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Locus	k04644
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 25.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah63l18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/T SNP structure (UNICODE) = ATTCTGTTTGWCAGGATCTCA Parent 1 SNP sequence = ATTCTGTTTGACAGGATCTCA Parent 2 SNP sequence = ATTCTGTTTGTCAGGATCTCA SNP = A/G SNP structure (UNICODE) = TCTCGGCCTCRTCAAAGAAGA Parent 1 SNP sequence = TCTCGGCCTCATCAAAGAAGA Parent 2 SNP sequence = TCTCGGCCTCGTCAAAGAAGA
Probe for Locus	bah63l18
Locus	k04644
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phytoene synthase 2 [Zea mays]
Type	PCR
PCR primers	Left 5' - AGTTCAGGATGCCAGATGCT Right 5' - ATGTTGCCGATGCTCTTCTT
Sequence	BJ486942
PCR size	428