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GrainGenes Marker Report: k04647

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Locus	k04647
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 161.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah60k11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = TCCATGAGGCYGAACCTAACT Parent 1 SNP sequence = TCCATGAGGCCGAACCTAACT Parent 2 SNP sequence = TCCATGAGGCTGAACCTAACT SNP = G/A SNP structure (UNICODE) = ATAAGAAATCRTCAGAAACAG Parent 1 SNP sequence = ATAAGAAATCGTCAGAAACAG Parent 2 SNP sequence = ATAAGAAATCATCAGAAACAG SNP = A/G SNP structure (UNICODE) = AGAAACAGTGRGAAAACCTAG Parent 1 SNP sequence = AGAAACAGTGAGAAAACCTAG Parent 2 SNP sequence = AGAAACAGTGGGAAAACCTAG
Probe for Locus	bah60k11
Locus	k04647
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0067K08.12 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCGACAACCAAAAGGGTCTA Right 5' - TGAAACCTGCTTCATCATCG
Sequence	BJ486175
PCR size	473