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GrainGenes Marker Report: k04654

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Locus	k04654
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah62p18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = A/T SNP structure (UNICODE) = CCGATAGGCCWCACTTGTCAA Parent 1 SNP sequence = CCGATAGGCCACACTTGTCAA Parent 2 SNP sequence = CCGATAGGCCTCACTTGTCAA SNP = C/T SNP structure (UNICODE) = CAGAATTCTGYTCCTTAGTGC Parent 1 SNP sequence = CAGAATTCTGCTCCTTAGTGC Parent 2 SNP sequence = CAGAATTCTGTTCCTTAGTGC SNP structure (UNICODE) = CAGGAGAATAYGGAAGTCAGA Parent 1 SNP sequence = CAGGAGAATACGGAAGTCAGA Parent 2 SNP sequence = CAGGAGAATATGGAAGTCAGA
Probe for Locus	bah62p18
Locus	k04654
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0710A02.20 [Oryza sativa (japonica cultivar-group)] dbj BAB55821.1 P0710A02.20 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGTCAGAAAATTAGGCCTCG Right 5' - ACGTTCAACGAGATCCTGCT
Sequence	BJ486801
PCR size	399