GrainGenes Marker Report: k04666
Locus
k04666
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 213.6
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bah63a08
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/G SNP structure (UNICODE) = ACTTCAAGTGSAATCGTGCTA Parent 1 SNP sequence = ACTTCAAGTGCAATCGTGCTA Parent 2 SNP sequence = ACTTCAAGTGGAATCGTGCTA Recognized sequence for CAPs locus = GANTC
Probe for Locus
bah63a08
Locus
k04666
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative fatty acid hydroxylase [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - TTCGCTGCAGATCATTTCAC
Right 5' - GATGCCGAGAAAAAGGAGTG
Sequence
BJ486809
PCR size
394
GrainGenes Marker Report: k04666
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