GrainGenes Marker Report: k04683
Locus
k04683
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 120.2
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bah60l22
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = G/A SNP structure (UNICODE) = CGCCAAACTARTAGGACAAAA Parent 1 SNP sequence = CGCCAAACTAGTAGGACAAAA Parent 2 SNP sequence = CGCCAAACTAATAGGACAAAA Recognized sequence for CAPs locus = CTAG
Probe for Locus
bah60l22
Locus
k04683
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = hypothetical protein F14F18.210 - Arabidopsis thaliana emb CAB87677.1 putative protein [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - TCCTGATGCACCCACTACAG
Right 5' - AGCTGCATCGAAGGTTTCAG
Sequence
BJ486191
PCR size
408
GrainGenes Marker Report: k04683
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