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GrainGenes Marker Report: k04699

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Locus	k04699
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 18.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah61p17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/G SNP structure (UNICODE) = ATAATGTATCSACATTCTCGC Parent 1 SNP sequence = ATAATGTATCCACATTCTCGC Parent 2 SNP sequence = ATAATGTATCGACATTCTCGC SNP = C/T SNP structure (UNICODE) = TTTTCTGAAAYGCAAACAATA Parent 1 SNP sequence = TTTTCTGAAACGCAAACAATA Parent 2 SNP sequence = TTTTCTGAAATGCAAACAATA SNP = C/A SNP structure (UNICODE) = CGCTTGCCCAMGTGTGCAACA Parent 1 SNP sequence = CGCTTGCCCACGTGTGCAACA Parent 2 SNP sequence = CGCTTGCCCAAGTGTGCAACA
Probe for Locus	bah61p17
Locus	k04699
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir D86484 hypothetical protein F7F23.4 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - AGACAGAGCGGCAGATTCAT Right 5' - GGATGCCTTTTTCCATGCTA
Sequence	BJ486605
PCR size	481