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GrainGenes Marker Report: k04701

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Locus	k04701
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 156.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah62n05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = GAAAAAACGCRTGAGTCTAAC Parent 1 SNP sequence = GAAAAAACGCATGAGTCTAAC Parent 2 SNP sequence = GAAAAAACGCGTGAGTCTAAC Recognized sequence for CAPs locus = CGCG
Probe for Locus	bah62n05
Locus	k04701
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ABC1 family protein kinase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATTTCCACCGATCTTGTTGC Right 5' - GCAAAGTGGTTCTAGGCAGC
Sequence	BJ486771
PCR size	363