GrainGenes Marker Report: k04718
Locus
k04718
Type
CAPS
Chromosome
3H
Map
Hv-HNxH602-3H 235.2
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
basd11a10
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/A SNP structure (UNICODE) = AGGCGTCCCCRGCCTGCGCGG Parent 1 SNP sequence = AGGCGTCCCCGGCCTGCGCGG Parent 2 SNP sequence = AGGCGTCCCCAGCCTGCGCGG Recognized sequence for CAPs locus = CCGG
Probe for Locus
basd11a10
Locus
k04718
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = pectin-glucuronyltransferase [Nicotiana plumbaginifolia]
Type
PCR
PCR primers
Left 5' - GGTGACGATGAATCCAGGAC
Right 5' - GTGAGGTACAAGTCCGGCAG
Sequence
AV929109
PCR size
408
GrainGenes Marker Report: k04718
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