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GrainGenes Marker Report: k04722

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Locus	k04722
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 139.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd11p10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = C/T SNP structure (UNICODE) = ATTAGAATTCYAGTACACAAG Parent 1 SNP sequence = ATTAGAATTCCAGTACACAAG Parent 2 SNP sequence = ATTAGAATTCTAGTACACAAG Recognized sequence for CAPs locus = CTAG
Probe for Locus	basd11p10
Locus	k04722
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN) pir S42540 ribosomal protein S3a - rice
Type	PCR
PCR primers	Left 5' - AGTTGAGCATCGCAGGATTT Right 5' - TGTGTTTAAGTTGGAGGCCC
Sequence	AV929366
PCR size	360