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GrainGenes Marker Report: k04747

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Locus	k04747
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 146.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd13d17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = G/T SNP structure (UNICODE) = ACCGTTTCTAKTTGCACGGGA Parent 1 SNP sequence = ACCGTTTCTAGTTGCACGGGA Parent 2 SNP sequence = ACCGTTTCTATTTGCACGGGA SNP = G/C SNP structure (UNICODE) = ATTAGGTTCTSACCGTAGGCT Parent 1 SNP sequence = ATTAGGTTCTGACCGTAGGCT Parent 2 SNP sequence = ATTAGGTTCTCACCGTAGGCT SNP = A/G SNP structure (UNICODE) = CAGAGATTTCRAGACAATAGA Parent 1 SNP sequence = CAGAGATTTCAAGACAATAGA Parent 2 SNP sequence = CAGAGATTTCGAGACAATAGA SNP = T/C SNP structure (UNICODE) = TTAACAAGCGYTGTGTCACCT Parent 1 SNP sequence = TTAACAAGCGTTGTGTCACCT Parent 2 SNP sequence = TTAACAAGCGCTGTGTCACCT SNP = A/C SNP structure (UNICODE) = TAAAAACCTAMAAAGAGACAG Parent 1 SNP sequence = TAAAAACCTAAAAAGAGACAG Parent 2 SNP sequence = TAAAAACCTACAAAGAGACAG
Probe for Locus	basd13d17
Locus	k04747
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CATGTCAAACATCTCCACGG Right 5' - TTCTCCTCGTCTGTTCCGTT
Sequence	AV927911
PCR size	410