GrainGenes Marker Report: k04752
Locus
k04752
Type
CAPS
Chromosome
2H
Map
Hv-HNxH602-2H 79.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
basd14f16
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = G/C SNP structure (UNICODE) = GGATGCCCTASCATAAACTGA Parent 1 SNP sequence = GGATGCCCTAGCATAAACTGA Parent 2 SNP sequence = GGATGCCCTACCATAAACTGA Recognized sequence for CAPs locus = CTAG
Probe for Locus
basd14f16
Locus
k04752
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = contains ESTs AU100718(C12270),C26408(C12270)~unknown protein [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - GACACACAGCCCATGCATAC
Right 5' - GAAGTGATCCGGAGGTGAAG
Sequence
AV924382
PCR size
374
GrainGenes Marker Report: k04752
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