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GrainGenes Marker Report: k04755

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Locus	k04755
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 190.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd11g04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BanI SNP = G/C SNP structure (UNICODE) = TTTGGATGGTSCCCCAACACT Parent 1 SNP sequence = TTTGGATGGTGCCCCAACACT Parent 2 SNP sequence = TTTGGATGGTCCCCCAACACT Recognized sequence for CAPs locus = GGYRCC
Probe for Locus	basd11g04
Locus	k04755
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0008M17.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCAGCTACATCCGCAAGAT Right 5' - GGTGATCCCTACCTGAAGCA
Sequence	AV929203
PCR size	369