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GrainGenes Marker Report: k04768

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Locus	k04768
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 201.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd11k21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = AACGGGGCGCRAGAGTGAAGT Parent 1 SNP sequence = AACGGGGCGCAAGAGTGAAGT Parent 2 SNP sequence = AACGGGGCGCGAGAGTGAAGT Recognized sequence for CAPs locus = CGCG
Probe for Locus	basd11k21
Locus	k04768
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = IAA1 protein [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - AAACCACTTGACCATCCTGC Right 5' - CCGTATTGTTGCCAGGAGTT
Sequence	AV929282
PCR size	459